blob: 284740a18caa2d21c51b73c2c41868f1c6116fa5 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
|
<SECTION>
<FILE>reflist</FILE>
RefList
Reflection
RefListIterator
<SUBSECTION>
reflist_new
reflist_free
reflection_new
reflection_free
<SUBSECTION>
add_refl
add_refl_to_list
<SUBSECTION>
first_refl
next_refl
<SUBSECTION>
find_refl
next_found_refl
<SUBSECTION>
get_excitation_error
get_detector_pos
get_partiality
get_indices
get_symmetric_indices
get_intensity
get_partial
get_scalable
get_refinable
get_redundancy
get_esd_intensity
get_phase
get_temp1
get_temp2
<SUBSECTION>
set_detector_pos
set_partial
set_intensity
set_scalable
set_refinable
set_redundancy
set_esd_intensity
set_phase
set_symmetric_indices
set_temp1
set_temp2
<SUBSECTION>
copy_data
num_reflections
tree_depth
lock_reflection
unlock_reflection
</SECTION>
<SECTION>
<FILE>reflist-utils</FILE>
write_reflist
write_reflections_to_file
read_reflections
read_reflections_from_file
asymmetric_indices
res_cutoff
</SECTION>
<SECTION>
<FILE>unitcell</FILE>
UnitCell
<SUBSECTION>
cell_new
cell_new_from_cell
cell_new_from_direct_axes
cell_new_from_parameters
cell_new_from_reciprocal_axes
cell_free
<SUBSECTION>
cell_get_cartesian
cell_get_parameters
cell_get_pointgroup
cell_get_reciprocal
cell_get_spacegroup
<SUBSECTION>
cell_set_cartesian
cell_set_cartesian_a
cell_set_cartesian_b
cell_set_cartesian_c
cell_set_parameters
cell_set_pointgroup
cell_set_reciprocal
cell_set_spacegroup
<SUBSECTION>
cell_rotate
rotate_cell
cell_print
resolution
match_cell
match_cell_ab
</SECTION>
<SECTION>
<FILE>utils</FILE>
show_matrix_eqn
AssplodeFlag
C_VACUO
ELECTRON_CHARGE
ERROR
J_to_eV
PLANCK
STATUS
THOMSON_LENGTH
assplode
biggest
check_prefix
chomp
deg2rad
eV_to_J
gaussian_noise
safe_basename
progress_bar
rad2deg
is_odd
modulus
poisson_noise
notrail
smallest
ph_en_to_lambda
ph_lambda_to_en
</SECTION>
<SECTION>
<FILE>quaternion</FILE>
quaternion
<SUBSECTION>
quaternion_modulus
normalise_quaternion
random_quaternion
quaternion_valid
quat_rot
</SECTION>
<SECTION>
<FILE>image</FILE>
image
ImageFeatureList
image_add_feature
image_feature_closest
image_feature_count
image_feature_list_free
image_feature_list_new
image_get_feature
image_remove_feature
</SECTION>
<SECTION>
<FILE>thread-pool</FILE>
TPGetTaskFunc
TPWorkFunc
TPFinalFunc
<SUBSECTION>
run_threads
</SECTION>
<SECTION>
<FILE>statistics</FILE>
stat_pearson_f_ignore
stat_pearson_f_zero
stat_pearson_i
stat_r1_i
stat_r1_ignore
stat_r1_zero
stat_r2
stat_rdiff_ignore
stat_rdiff_intensity
stat_rdiff_zero
stat_scale_intensity
</SECTION>
<SECTION>
<FILE>simulation</FILE>
clError
cleanup_gpu
GradientMethod
get_cl_dev
get_diffraction
get_diffraction_gpu
setup_gpu
</SECTION>
<SECTION>
<FILE>indexing</FILE>
IndexingMethod
IndexingPrivate
MAX_CELL_CANDIDATES
build_indexer_list
cleanup_indexing
prepare_indexing
index_pattern
run_dirax
run_mosflm
indexingprivate
</SECTION>
<SECTION>
<FILE>symmetry</FILE>
SymOpList
SymOpMask
<SUBSECTION>
free_symoplist
num_equivs
get_pointgroup
get_equiv
special_position
get_asymm
get_ambiguities
is_subgroup
<SUBSECTION>
new_symopmask
free_symopmask
<SUBSECTION>
describe_symmetry
symmetry_name
is_centrosymmetric
</SECTION>
<SECTION>
<FILE>detector</FILE>
copy_geom
fill_in_values
free_detector_geometry
get_detector_geometry
find_panel
find_panel_by_name
find_panel_number
simple_geometry
record_image
get_pixel_extents
get_q
get_q_for_panel
get_tt
</SECTION>
<SECTION>
<FILE>hdf5-file</FILE>
hdf5_read
hdf5_write
hdfile
hdfile_close
hdfile_get_image_binned
hdfile_get_string_value
hdfile_open
hdfile_read_group
hdfile_set_first_image
hdfile_set_image
</SECTION>
<SECTION>
<FILE>stream</FILE>
parse_stream_flags
read_chunk
write_chunk
write_stream_header
skip_some_files
is_stream
get_value
count_patterns
</SECTION>
<SECTION>
<FILE>render</FILE>
render_get_colour_scale
render_panels
render_scale
render_tiff_fp
render_tiff_int16
</SECTION>
|
