blob: 00e4ec15948e5fabf187d8e4065609ea9016301e (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
|
#!/bin/sh
RUN=$1
NOSAMPLE=`echo $RUN | sed -e 's/\-.*$//'`
GEOM=my.geom # Name of your geometry file
find /path/to/CXI/files/$RUN -name '*.cxi' > files-${RUN}.lst # Set location of files
list_events -i files-${RUN}.lst -g $GEOM -o events-${RUN}.lst
wc -l events-${RUN}.lst
rm -f split-events-${RUN}.lst files-${RUN}.lst
split -d -l 500 events-${RUN}.lst split-events-${RUN}.lst
rm -f events-${RUN}.lst
for FILE in split-events-${RUN}.lst*; do
STREAM=`echo $FILE | sed -e "s/split-events-${RUN}.lst/${RUN}.stream/"`
NAME=`echo $FILE | sed -e "s/split-events-${RUN}.lst/${NOSAMPLE}-/"`
echo "$NAME: $FILE ---> $STREAM"
# Set indexing parameters here
bsub -q psanaq -o $NAME.log -J $NAME -n 12 -R "span[hosts=1]" \
indexamajig \
-i $FILE -o $STREAM -j 32 -g $GEOM --peaks=cxi
done
|
