1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
|
/*
* crystfelindexingopts.h
*
* A GTK widget to set indexing options
*
* Copyright © 2020-2021 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
* 2020 Thomas White <taw@physics.org>
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
#ifndef CRYSTFELINDEXINGOPTS_H
#define CRYSTFELINDEXINGOPTS_H
#include <gtk/gtk.h>
#include <glib-object.h>
#define CRYSTFEL_TYPE_INDEXING_OPTS (crystfel_indexing_opts_get_type())
#define CRYSTFEL_INDEXING_OPTS(obj) (G_TYPE_CHECK_INSTANCE_CAST((obj), \
CRYSTFEL_TYPE_INDEXING_OPTS, CrystFELIndexingOpts))
#define CRYSTFEL_IS_INDEXING_OPTS(obj) (G_TYPE_CHECK_INSTANCE_TYPE((obj), \
CRYSTFEL_TYPE_INDEXING_OPTS))
#define CRYSTFEL_INDEXING_OPTS_CLASS(klass) (G_TYPE_CHECK_CLASS_CAST((obj), \
CRYSTFEL_TYPE_INDEXING_OPTS, CrystFELIndexingOpts))
#define CRYSTFEL_IS_INDEXING_OPTS_CLASS(klass) (G_TYPE_CHECK_CLASS_TYPE((obj), \
CRYSTFEL_TYPE_INDEXING_OPTS))
#define CRYSTFEL_INDEXING_OPTS_GET_CLASS(obj) (G_TYPE_INSTANCE_GET_CLASS((obj), \
CRYSTFEL_TYPE_INDEXING_OPTS, CrystFELIndexingOpts))
struct _crystfelindexingopts
{
GtkNotebook parent_instance;
/*< private >*/
int show_stream_opts;
GtkWidget *stream_params; /* Stream output page */
char *cell_file;
GtkWidget *cell_chooser;
GtkWidget *auto_indm;
GtkWidget *indm_chooser;
GtkListStore *indm_store;
GtkWidget *multi;
GtkWidget *refine;
GtkWidget *retry;
GtkWidget *check_peaks;
GtkWidget *check_cell;
GtkWidget *tols[6]; /* frac (not %) and radians */
GtkWidget *enable_hitfind;
GtkWidget *ignore_fewer_peaks;
GtkWidget *integration_combo;
GtkWidget *centering;
GtkWidget *overpredict;
GtkWidget *limit_res;
GtkWidget *push_res;
GtkWidget *ir_inn;
GtkWidget *ir_mid;
GtkWidget *ir_out;
GtkWidget *fix_profile_radius_p;
GtkWidget *fix_profile_radius;
GtkWidget *fix_divergence;
GtkWidget *exclude_nonhits;
GtkWidget *no_peaks_in_stream;
GtkWidget *no_refls_in_stream;
GtkListStore *copy_metadata_store;
};
struct _crystfelindexingoptsclass
{
GtkNotebookClass parent_class;
};
typedef struct _crystfelindexingopts CrystFELIndexingOpts;
typedef struct _crystfelindexingoptsclass CrystFELIndexingOptsClass;
extern GType crystfel_indexing_opts_get_type(void);
extern GtkWidget *crystfel_indexing_opts_new(void);
extern char *crystfel_indexing_opts_get_cell_file(CrystFELIndexingOpts *opts);
extern char *crystfel_indexing_opts_get_indexing_method_string(CrystFELIndexingOpts *opts);
extern int crystfel_indexing_opts_get_multi_lattice(CrystFELIndexingOpts *opts);
extern int crystfel_indexing_opts_get_refine(CrystFELIndexingOpts *opts);
extern int crystfel_indexing_opts_get_retry(CrystFELIndexingOpts *opts);
extern int crystfel_indexing_opts_get_peak_check(CrystFELIndexingOpts *opts);
extern int crystfel_indexing_opts_get_cell_check(CrystFELIndexingOpts *opts);
extern void crystfel_indexing_opts_get_tolerances(CrystFELIndexingOpts *opts,
float *tols); /* frac (not %) and rad */
extern int crystfel_indexing_opts_get_min_peaks(CrystFELIndexingOpts *opts);
extern char *crystfel_indexing_opts_get_integration_method_string(CrystFELIndexingOpts *opts);
extern int crystfel_indexing_opts_get_overpredict(CrystFELIndexingOpts *opts);
extern float crystfel_indexing_opts_get_push_res(CrystFELIndexingOpts *opts);
extern void crystfel_indexing_opts_get_integration_radii(CrystFELIndexingOpts *opts,
float *ir_inn,
float *ir_mid,
float *ir_out);
extern int crystfel_indexing_opts_get_exclude_blanks(CrystFELIndexingOpts *opts);
extern int crystfel_indexing_opts_get_exclude_peaks(CrystFELIndexingOpts *opts);
extern int crystfel_indexing_opts_get_exclude_reflections(CrystFELIndexingOpts *opts);
extern char **crystfel_indexing_opts_get_metadata_to_copy(CrystFELIndexingOpts *opts,
int *n);
extern double crystfel_indexing_opts_get_fixed_profile_radius(CrystFELIndexingOpts *opts,
int *active);
extern double crystfel_indexing_opts_get_fixed_divergence(CrystFELIndexingOpts *opts);
extern void crystfel_indexing_opts_set_show_stream_opts(CrystFELIndexingOpts *opts,
int val);
extern void crystfel_indexing_opts_set_cell_file(CrystFELIndexingOpts *opts,
const char *cell_file);
extern void crystfel_indexing_opts_set_indexing_method_string(CrystFELIndexingOpts *opts,
const char *indm_str);
extern void crystfel_indexing_opts_set_multi_lattice(CrystFELIndexingOpts *opts,
int multi);
extern void crystfel_indexing_opts_set_refine(CrystFELIndexingOpts *opts,
int refine);
extern void crystfel_indexing_opts_set_retry(CrystFELIndexingOpts *opts,
int retry);
extern void crystfel_indexing_opts_set_peak_check(CrystFELIndexingOpts *opts,
int peak_check);
extern void crystfel_indexing_opts_set_cell_check(CrystFELIndexingOpts *opts,
int cell_check);
extern void crystfel_indexing_opts_set_tolerances(CrystFELIndexingOpts *opts,
float *tols); /* frac (not %) and rad */
extern void crystfel_indexing_opts_set_min_peaks(CrystFELIndexingOpts *opts,
int min_peaks);
extern void crystfel_indexing_opts_set_integration_method_string(CrystFELIndexingOpts *opts,
const char *integr_str);
extern void crystfel_indexing_opts_set_overpredict(CrystFELIndexingOpts *opts,
int overpredict);
extern void crystfel_indexing_opts_set_push_res(CrystFELIndexingOpts *opts,
float push_res);
extern void crystfel_indexing_opts_set_integration_radii(CrystFELIndexingOpts *opts,
float ir_inn,
float ir_mid,
float ir_out);
extern void crystfel_indexing_opts_set_metadata_to_copy(CrystFELIndexingOpts *opts,
char *const *headers,
int n_headers);
extern void crystfel_indexing_opts_set_exclude_blanks(CrystFELIndexingOpts *opts,
int flag);
extern void crystfel_indexing_opts_set_exclude_peaks(CrystFELIndexingOpts *opts,
int flag);
extern void crystfel_indexing_opts_set_exclude_reflections(CrystFELIndexingOpts *opts,
int flag);
extern void crystfel_indexing_opts_set_fixed_profile_radius(CrystFELIndexingOpts *opts,
int active,
double val);
extern void crystfel_indexing_opts_set_fixed_divergence(CrystFELIndexingOpts *opts,
double val);
#endif /* CRYSTFELINDEXINGOPTS_H */
|
