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/*
* gui_align.c
*
* Align detector via CrystFEL GUI
*
* Copyright © 2024 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
* 2024 Thomas White <taw@physics.org>
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <stdarg.h>
#include <stdio.h>
#include <string.h>
#include <gtk/gtk.h>
#include <assert.h>
#include "version.h"
#include "gui_project.h"
#include "crystfel_gui.h"
#include "gtk-util-routines.h"
struct align_window
{
struct crystfelproject *proj;
GtkWidget *window;
GtkWidget *input_combo;
GtkWidget *out_of_plane;
GtkWidget *level;
};
static int run_align(const char *input_name, int level, int out_of_plane,
const char *out_geom, struct crystfelproject *proj)
{
GSubprocess *sp;
struct gui_indexing_result *res;
GError *error;
const char *cmdline[1024];
char *freeme[1024];
int nfree = 0;
char level_str[64];
GFile *gstream;
GFile *gworkdir;
GFile *ggeom;
char *input_geom;
int i;
int ncmd = 0;
int mdstart;
GFileEnumerator *fenum;
res = find_indexing_result_by_name(proj, input_name);
if ( res == NULL ) {
ERROR("Results for '%s' not found!\n", input_name);
return 1;
}
/* Figure out working directory for indexing job */
if ( res->n_streams < 1 ) {
ERROR("No streams?\n");
return 1;
}
gstream = g_file_new_for_path(res->streams[0]);
gworkdir = g_file_get_parent(gstream);
g_object_unref(gstream);
/* Input geometry file */
ggeom = g_file_get_child(gworkdir, "detector.geom");
input_geom = g_file_get_path(ggeom);
g_object_unref(ggeom);
/* Build command line */
snprintf(level_str, 63, "%i", level);
cmdline[ncmd++] = "align_detector";
cmdline[ncmd++] = "-g";
cmdline[ncmd++] = input_geom;
cmdline[ncmd++] = "--level";
cmdline[ncmd++] = level_str;
cmdline[ncmd++] = "-o";
cmdline[ncmd++] = out_geom;
if ( out_of_plane ) {
cmdline[ncmd++] = "--out-of-plane";
}
mdstart = ncmd;
/* Look for Millepede files */
error = NULL;
fenum = g_file_enumerate_children(gworkdir,
G_FILE_ATTRIBUTE_STANDARD_NAME,
G_FILE_QUERY_INFO_NONE,
NULL, &error);
if ( fenum == NULL ) {
ERROR("Failed to search alignment data\n");
return 1;
}
while ( 1 ) {
GFileInfo *finfo;
const char *n;
if ( !g_file_enumerator_iterate(fenum, &finfo, NULL, NULL, &error) ) goto out;
if ( !finfo ) break;
if ( ncmd >= 1023 ) {
ERROR("Too many Millepede directories! Run align_detector manually.\n");
return 1;
}
n = g_file_info_get_name(finfo);
if ( strncmp(n, "mille-data", 10) != 0 ) continue;
char *ffs = relative_to_cwd(gworkdir, n);
cmdline[ncmd++] = ffs;
freeme[nfree++] = ffs;
}
out:
g_object_unref(fenum);
if ( ncmd == mdstart ) {
ERROR("No detector alignment data found for indexing run '%s'\n", input_name);
return 1;
}
cmdline[ncmd++] = NULL;
STATUS("Running program: ");
i = 0;
while ( cmdline[i] != NULL ) {
STATUS("%s ", cmdline[i++]);
}
STATUS("\n");
error = NULL;
sp = g_subprocess_newv(cmdline, G_SUBPROCESS_FLAGS_NONE, &error);
if ( sp == NULL ) {
ERROR("Failed to run align_detector: %s\n", error->message);
g_error_free(error);
return 1;
}
for ( i=0; i<nfree; i++ ) {
g_free(freeme[i]);
}
g_object_unref(gworkdir);
g_free(input_geom);
return 0;
}
static void align_response_sig(GtkWidget *dialog, gint resp,
struct align_window *win)
{
int r = 0;
if ( resp == GTK_RESPONSE_ACCEPT ) {
int level;
const char *input_name;
int out_of_plane;
gchar *filename;
level = gtk_spin_button_get_value_as_int(GTK_SPIN_BUTTON(win->level));
input_name = get_combo_id(win->input_combo);
if ( input_name == NULL ) {
ERROR("Please select the input\n");
r = 1;
}
out_of_plane = get_bool(win->out_of_plane);
filename = gtk_file_chooser_get_filename(GTK_FILE_CHOOSER(dialog));
r = run_align(input_name, level, out_of_plane, filename, win->proj);
g_free(filename);
}
if ( !r ) gtk_widget_destroy(dialog);
}
gint align_sig(GtkWidget *widget, struct crystfelproject *proj)
{
GtkWidget *hbox;
GtkWidget *label;
struct align_window *win;
int i;
win = malloc(sizeof(struct align_window));
if ( win == NULL ) return 0;
win->proj = proj;
win->window = gtk_file_chooser_dialog_new("Align detector",
GTK_WINDOW(proj->window),
GTK_FILE_CHOOSER_ACTION_SAVE,
GTK_STOCK_CANCEL, GTK_RESPONSE_CANCEL,
GTK_STOCK_SAVE, GTK_RESPONSE_ACCEPT,
NULL);
gtk_file_chooser_set_do_overwrite_confirmation(GTK_FILE_CHOOSER(win->window),
TRUE);
hbox = gtk_hbox_new(FALSE, 0.0);
gtk_file_chooser_set_extra_widget(GTK_FILE_CHOOSER(win->window),
GTK_WIDGET(hbox));
gtk_container_set_border_width(GTK_CONTAINER(hbox), 4);
label = gtk_label_new("Refine using indexing result:");
gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(label),
FALSE, FALSE, 4.0);
win->input_combo = gtk_combo_box_text_new();
gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(win->input_combo),
FALSE, FALSE, 4.0);
for ( i=0; i<proj->n_results; i++ ) {
gtk_combo_box_text_append(GTK_COMBO_BOX_TEXT(win->input_combo),
proj->results[i].name,
proj->results[i].name);
}
gtk_combo_box_set_active_id(GTK_COMBO_BOX(win->input_combo),
selected_result(proj));
label = gtk_label_new("Hierarchy level:");
gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(label),
FALSE, FALSE, 16.0);
win->level = gtk_spin_button_new_with_range(0.0, 9.0, 1.0);
gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(win->level),
FALSE, FALSE, 4.0);
gtk_widget_set_tooltip_text(win->level, "--level");
win->out_of_plane = gtk_check_button_new_with_label("Include out-of-plane positions and tilts");
gtk_box_pack_start(GTK_BOX(hbox), GTK_WIDGET(win->out_of_plane),
FALSE, FALSE, 4.0);
gtk_widget_set_tooltip_text(win->out_of_plane, "--out-of-plane");
g_signal_connect(G_OBJECT(win->window), "response",
G_CALLBACK(align_response_sig), win);
gtk_dialog_set_default_response(GTK_DIALOG(win->window),
GTK_RESPONSE_CLOSE);
gtk_widget_show_all(win->window);
return FALSE;
}
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