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/*
* im-sandbox.h
*
* Sandbox for indexing
*
* Copyright © 2012 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
* Copyright © 2012 Richard Kirian
* Copyright © 2012 Lorenzo Galli
*
* Authors:
* 2010-2012 Thomas White <taw@physics.org>
* 2011 Richard Kirian
* 2012 Lorenzo Galli
* 2012 Chunhong Yoon
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
enum {
PEAK_ZAEF,
PEAK_HDF5,
};
/* Information about the indexing process which is common to all patterns */
struct index_args
{
UnitCell *cell;
int config_cmfilter;
int config_noisefilter;
int config_verbose;
int stream_flags; /* What goes into the output? */
int config_satcorr;
int config_closer;
int config_insane;
int config_bgsub;
float threshold;
float min_gradient;
float min_snr;
double min_int_snr;
struct detector *det;
IndexingMethod *indm;
IndexingPrivate **ipriv;
int peaks; /* Peak detection method */
int cellr;
float tols[4];
struct beam_params *beam;
char *element;
char *hdf5_peak_path;
double ir_inn;
double ir_mid;
double ir_out;
struct copy_hdf5_field *copyme;
int integrate_saturated;
int use_saturated;
int no_revalidate;
int integrate_found;
};
/* Information about the indexing process for one pattern */
struct pattern_args
{
/* "Input" */
char *filename;
/* "Output" */
int indexable;
};
extern void create_sandbox(struct index_args *iargs, int n_proc, char *prefix,
int config_basename, FILE *fh,
char *use_this_one_instead, FILE *ofh);
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