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| author | Thomas White <taw@physics.org> | 2011-07-01 11:48:20 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2012-02-22 15:27:31 +0100 |
| commit | 17fde9fe588cd9dea698889f77f19298663ab387 (patch) | |
| tree | a3eefc01badd01f9e6aa274408fcd5720aa5bde7 | |
| parent | e823e546e3a4b78f52136c56669713dae8f3ebde (diff) | |
indexamajig: Make --bg-sub the default
| -rw-r--r-- | src/indexamajig.c | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index f1c39a30..91cce62f 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -175,8 +175,6 @@ static void show_help(const char *s) " --unpolarized Don't correct for the polarisation of the X-rays.\n" " --no-sat-corr Don't correct values of saturated peaks using a\n" " table included in the HDF5 file.\n" -" --bg-sub Subtract local background estimates from\n" -" integrated intensities.\n" " --threshold=<n> Only accept peaks above <n> ADU. Default: 800.\n" " --min-gradient=<n> Minimum gradient for Zaefferer peak search.\n" " Default: 100,000.\n" @@ -195,6 +193,8 @@ static void show_help(const char *s) " lattice point.\n" " --insane Don't check that the reduced cell accounts for at\n" " least 10%% of the located peaks.\n" +" --no-bg-sub Don't subtract local background estimates from\n" +" integrated intensities.\n" "\n" "\nYou can tune the CPU affinities for enhanced performance on NUMA machines:\n" "\n" @@ -493,7 +493,7 @@ int main(int argc, char *argv[]) int config_checkprefix = 1; int config_closer = 1; int config_insane = 0; - int config_bgsub = 0; + int config_bgsub = 1; int config_basename = 0; float threshold = 800.0; float min_gradient = 100000.0; @@ -555,7 +555,8 @@ int main(int argc, char *argv[]) {"cpus", 1, NULL, 6}, {"cpugroup", 1, NULL, 7}, {"cpuoffset", 1, NULL, 8}, - {"bg-sub", 1, &config_bgsub, 0}, + {"bg-sub", 0, &config_bgsub, 1}, + {"no-bg-sub", 0, &config_bgsub, 0}, {0, 0, NULL, 0} }; |