aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorThomas White <taw@physics.org>2010-07-01 15:38:30 +0200
committerThomas White <taw@physics.org>2012-02-22 15:26:52 +0100
commit1e897dcee7418b337bcf3f63b34cdf51a721a29a (patch)
tree90e51d7f3975cbd02082b5c7dc18b242671e696e
parenta5344781f9b5562c2d5009188906c8cb1c571543 (diff)
Add doc/geometry
-rw-r--r--doc/geometry52
1 files changed, 52 insertions, 0 deletions
diff --git a/doc/geometry b/doc/geometry
new file mode 100644
index 00000000..d4fcdb79
--- /dev/null
+++ b/doc/geometry
@@ -0,0 +1,52 @@
+CrystFEL detector geometry files
+--------------------------------
+
+The detector geometry is taken from a text file rather than hardcoded into the
+program. Programs which care about the geometry (indexamajig, pattern_sim and
+powder_plot) take an argument "--geometry=<file>" (or "-g <file>"), where <file>
+contains the geometry. CrystFEL's representation of a detector is broken down
+into one or more "panels", each of which has its own location for the centre of
+the panel (i.e. the location of the central beam), its own camera length,
+resolution and so on. Each panel fits into the overall image taken from the
+HDF5 file, defined by minimum and maximum coordinates in x and y. The
+coordinates are specified inclusively, meaning that a minimum of 0 and a maximum
+of 9 results in ten items. Counting begins from zero. All pixels in the image
+must be assigned to a panel.
+
+See "A note on data orientation" in the top level README file for important
+information about how CrystFEL defines the axes. All coordinates (including the
+centre coordinates for each panel) are measured according to these axes: there
+is no coordinate system local to a panel.
+
+The syntax for a simple geometry might be as follows:
+
+; The number of panels
+n_panels = 1
+
+; "0/" specifies the first (and only) panel. If we had more panels, there would
+; be a copy of the following lines but prefixes with "1/", "2/" and so on.
+
+; The region of the image which belongs to this panel:
+0/min_x = 0
+0/max_x = 1023
+0/min_y = 512
+0/max_y = 1023
+
+; The coordinates of the central beam which should be
+; used for pixels in this panel:
+0/cx = 491.9
+0/cy = 440.7
+
+; The camera length (in metres) for this panel
+0/clen = 67.8e-3
+
+; The resolution (in pixels per metre) for this panel
+0/res = 13333.3 ; 75 micron pixel size
+
+; The readout direction (x or y). If more than three peaks are found in
+; the same readout region, they are all discarded. This helps to avoid
+; problems due to streaks appearing along the readout direction.
+0/badrow_direction = y
+
+
+See the "examples" folder for some examples.