aboutsummaryrefslogtreecommitdiff
path: root/src
diff options
context:
space:
mode:
authorValerio Mariani <valerio.mariani@desy.de>2015-02-03 13:57:50 +0100
committerThomas White <taw@physics.org>2015-02-05 15:24:31 +0100
commit30a43a9ccadfb72432264fdb6a5bca8540b06e86 (patch)
treea2f50577ecef7ca9663136408a8816a7cfec2fd9 /src
parentcaf40e65f8a658ae72b9f77a4af60651da9236e6 (diff)
Remove --element option from inxexamajig
Diffstat (limited to 'src')
-rw-r--r--src/im-sandbox.c1
-rw-r--r--src/indexamajig.c11
-rw-r--r--src/process_image.h1
3 files changed, 1 insertions, 12 deletions
diff --git a/src/im-sandbox.c b/src/im-sandbox.c
index 61cfa459..ba709f6f 100644
--- a/src/im-sandbox.c
+++ b/src/im-sandbox.c
@@ -516,7 +516,6 @@ static void run_work(const struct index_args *iargs,
free(iargs->indm);
free(iargs->ipriv);
free_detector_geometry(iargs->det);
- free(iargs->element);
free(iargs->hdf5_peak_path);
free_copy_hdf5_field_list(iargs->copyme);
cell_free(iargs->cell);
diff --git a/src/indexamajig.c b/src/indexamajig.c
index e3daa1c9..44f067e2 100644
--- a/src/indexamajig.c
+++ b/src/indexamajig.c
@@ -125,9 +125,6 @@ static void show_help(const char *s)
" --check-hdf5-snr Check SNR for peaks from --peaks=hdf5.\n"
" --peak-radius=<r> Integration radii for peak search.\n"
" --int-radius=<r> Set the integration radii. Default: 4,5,7.\n"
-"-e, --image=<element> Use this image from the HDF5 file.\n"
-" Example: /data/data0.\n"
-" Default: The first one found.\n"
" --push-res=<n> Integrate higher than apparent resolution cutoff.\n"
" --highres=<n> Absolute resolution cutoff in Angstroms.\n"
"\n"
@@ -217,7 +214,6 @@ int main(int argc, char *argv[])
iargs.det = NULL;
iargs.peaks = PEAK_ZAEF;
iargs.beam = &beam;
- iargs.element = NULL;
iargs.hdf5_peak_path = strdup("/processing/hitfinder/peakinfo");
iargs.cxi_hdf5_peaks = 0;
iargs.copyme = NULL;
@@ -256,7 +252,6 @@ int main(int argc, char *argv[])
{"pdb", 1, NULL, 'p'},
{"prefix", 1, NULL, 'x'},
{"threshold", 1, NULL, 't'},
- {"image", 1, NULL, 'e'},
{"beam", 1, NULL, 'b'},
/* Long-only options with no arguments */
@@ -303,7 +298,7 @@ int main(int argc, char *argv[])
};
/* Short options */
- while ((c = getopt_long(argc, argv, "hi:o:z:p:x:j:g:t:e:vb:",
+ while ((c = getopt_long(argc, argv, "hi:o:z:p:x:j:g:t:vb:",
longopts, NULL)) != -1)
{
switch (c) {
@@ -355,10 +350,6 @@ int main(int argc, char *argv[])
iargs.threshold = strtof(optarg, NULL);
break;
- case 'e' :
- iargs.element = strdup(optarg);
- break;
-
case 2 :
speaks = strdup(optarg);
break;
diff --git a/src/process_image.h b/src/process_image.h
index 8dba8a85..a0bd6a83 100644
--- a/src/process_image.h
+++ b/src/process_image.h
@@ -62,7 +62,6 @@ struct index_args
int peaks; /* Peak detection method */
float tols[4];
struct beam_params *beam;
- char *element;
char *hdf5_peak_path;
int cxi_hdf5_peaks;
float pk_inn;