diff options
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | Makefile.am | 151 | ||||
| -rw-r--r-- | Makefile.in | 747 | ||||
| -rw-r--r-- | aclocal.m4 | 35 | ||||
| -rwxr-xr-x | build-aux/compile | 143 | ||||
| -rw-r--r-- | config.h.in | 3 | ||||
| -rwxr-xr-x | configure | 174 | ||||
| -rw-r--r-- | configure.ac | 11 | ||||
| -rw-r--r-- | data/Makefile.am | 11 | ||||
| -rw-r--r-- | data/Makefile.in | 514 | ||||
| -rw-r--r-- | doc/Makefile.am | 7 | ||||
| -rw-r--r-- | doc/Makefile.in | 491 | ||||
| -rw-r--r-- | doc/examples/Makefile.am | 4 | ||||
| -rw-r--r-- | doc/examples/Makefile.in | 487 | ||||
| -rw-r--r-- | lib/Makefile.in | 14 | ||||
| -rw-r--r-- | scripts/Makefile.am | 11 | ||||
| -rw-r--r-- | scripts/Makefile.in | 495 |
17 files changed, 1207 insertions, 2092 deletions
@@ -20,4 +20,5 @@ src/cubeit src/reintegrate src/estimate_background src/check_hkl +src/.dirstamp *~ diff --git a/Makefile.am b/Makefile.am index 7e6224bd..43367dac 100644 --- a/Makefile.am +++ b/Makefile.am @@ -1,3 +1,152 @@ EXTRA_DIST = configure m4/gnulib-cache.m4 -SUBDIRS = lib src data doc doc/examples scripts +SUBDIRS = lib ACLOCAL_AMFLAGS = -I m4 + +bin_PROGRAMS = src/pattern_sim src/process_hkl src/get_hkl src/indexamajig \ + src/compare_hkl src/powder_plot src/render_hkl \ + src/calibrate_detector src/facetron src/reintegrate \ + src/estimate_background src/check_hkl + +if HAVE_GTK +bin_PROGRAMS += src/hdfsee +endif + +if HAVE_CAIRO +bin_PROGRAMS += src/cubeit +endif + +AM_CFLAGS = -Wall +AM_CPPFLAGS = -DDATADIR=\""$(datadir)"\" -I$(top_builddir)/lib -I$(top_srcdir)/lib +LDADD = $(top_builddir)/lib/libgnu.a + +src_pattern_sim_SOURCES = src/pattern_sim.c src/diffraction.c src/utils.c \ + src/image.c src/cell.c src/hdf5-file.c src/detector.c \ + src/sfac.c src/peaks.c src/reflections.c \ + src/beam-parameters.c src/symmetry.c +if HAVE_OPENCL +src_pattern_sim_SOURCES += src/diffraction-gpu.c src/cl-utils.c +endif + +src_process_hkl_SOURCES = src/process_hkl.c src/sfac.c src/statistics.c src/cell.c \ + src/utils.c src/reflections.c src/symmetry.c \ + src/stream.c src/beam-parameters.c + +src_indexamajig_SOURCES = src/indexamajig.c src/hdf5-file.c src/utils.c src/cell.c \ + src/image.c src/peaks.c src/index.c src/filters.c \ + src/diffraction.c src/detector.c src/sfac.c src/dirax.c \ + src/mosflm.c src/reflections.c src/templates.c \ + src/symmetry.c src/geometry.c src/thread-pool.c \ + src/beam-parameters.c +if HAVE_OPENCL +src_indexamajig_SOURCES += src/diffraction-gpu.c src/cl-utils.c +endif + + +if HAVE_GTK +src_hdfsee_SOURCES = src/hdfsee.c src/displaywindow.c src/render.c src/hdf5-file.c \ + src/utils.c src/image.c src/filters.c +endif + +src_get_hkl_SOURCES = src/get_hkl.c src/sfac.c src/cell.c src/utils.c \ + src/reflections.c src/symmetry.c src/beam-parameters.c + +src_compare_hkl_SOURCES = src/compare_hkl.c src/sfac.c src/cell.c src/utils.c \ + src/reflections.c src/statistics.c src/symmetry.c + +src_check_hkl_SOURCES = src/check_hkl.c src/sfac.c src/cell.c src/utils.c \ + src/reflections.c src/statistics.c src/symmetry.c + +src_powder_plot_SOURCES = src/powder_plot.c src/cell.c src/utils.c src/image.c \ + src/hdf5-file.c src/detector.c + +src_render_hkl_SOURCES = src/render_hkl.c src/cell.c src/reflections.c src/utils.c \ + src/povray.c src/symmetry.c src/render.c src/hdf5-file.c \ + src/image.c src/filters.c + +src_calibrate_detector_SOURCES = src/calibrate_detector.c src/utils.c \ + src/hdf5-file.c src/image.c src/filters.c \ + src/peaks.c src/detector.c src/cell.c \ + src/thread-pool.c + +src_facetron_SOURCES = src/facetron.c src/cell.c src/hdf5-file.c src/utils.c \ + src/detector.c src/peaks.c src/image.c src/geometry.c \ + src/reflections.c src/stream.c src/thread-pool.c \ + src/beam-parameters.c src/symmetry.c src/post-refinement.c \ + src/hrs-scaling.c + +if HAVE_CAIRO +src_cubeit_SOURCES = src/cubeit.c src/cell.c src/hdf5-file.c src/utils.c \ + src/detector.c src/render.c src/filters.c src/image.c \ + src/symmetry.c src/stream.c src/thread-pool.c +endif + +src_reintegrate_SOURCES = src/reintegrate.c src/cell.c src/hdf5-file.c src/utils.c \ + src/detector.c src/peaks.c src/image.c src/stream.c \ + src/index.c src/dirax.c src/mosflm.c src/templates.c \ + src/geometry.c src/symmetry.c src/thread-pool.c + +src_estimate_background_SOURCES = src/estimate_background.c src/stream.c \ + src/utils.c src/cell.c + +INCLUDES = "-I$(top_srcdir)/data" + +EXTRA_DIST += src/cell.h src/hdf5-file.h src/image.h src/utils.h \ + src/diffraction.h src/detector.h src/sfac.h src/reflections.h \ + src/list_tmp.h src/statistics.h src/displaywindow.h \ + src/render.h src/hdfsee.h src/dirax.h src/mosflm.h src/peaks.h \ + src/index.h src/filters.h src/diffraction-gpu.h src/cl-utils.h \ + src/symmetry.h src/povray.h src/index-priv.h src/geometry.h \ + src/templates.h src/render_hkl.h src/stream.h src/thread-pool.h \ + src/beam-parameters.h src/post-refinement.h src/hrs-scaling.h + +hdfseedir = $(datadir)/hdfsee +hdfsee_DATA = data/displaywindow.ui + +crystfeldir = $(datadir)/crystfel +crystfel_DATA = data/diffraction.cl data/defs.h data/sfac/Ca.nff \ + data/sfac/C.nff data/sfac/Fe.nff data/sfac/H.nff \ + data/sfac/Mg.nff data/sfac/N.nff data/sfac/O.nff \ + data/sfac/P.nff data/sfac/S.nff data/sfac/f0_WaasKirf.dat + +EXTRA_DIST += data/sfac/Ca.nff data/sfac/C.nff data/sfac/Fe.nff \ + data/sfac/H.nff data/sfac/Mg.nff data/sfac/N.nff data/sfac/O.nff \ + data/sfac/P.nff data/sfac/S.nff data/sfac/f0_WaasKirf.dat \ + data/defs.h data/diffraction.cl data/displaywindow.ui + +crystfeldocdir = $(docdir) +crystfeldoc_DATA = doc/geometry.txt doc/indexamajig.txt doc/pattern_sim.txt \ + doc/process_hkl.txt doc/symmetry.txt \ + doc/twin-calculator.pdf \ + doc/0-INDEX doc/examples/lcls-dec.geom \ + doc/examples/lcls-dec.beam \ + doc/examples/lcls-june-r0013-r0128.geom \ + doc/examples/lcls-june.beam \ + doc/examples/lcls-xpp-estimate.geom \ + doc/examples/lcls-xpp-estimate.beam \ + doc/examples/simple.geom + +EXTRA_DIST += doc/geometry.txt doc/indexamajig.txt doc/pattern_sim.txt \ + doc/process_hkl.txt doc/symmetry.txt doc/twin-calculator.pdf \ + doc/0-INDEX doc/examples/lcls-dec.geom \ + doc/examples/lcls-june-r0013-r0128.geom \ + doc/examples/lcls-xpp-estimate.geom doc/examples/simple.geom + +scriptdir = $(docdir)/scripts +script_DATA = scripts/check-near-bragg scripts/double-hit \ + scripts/random-image scripts/stream-split scripts/wibbletron \ + scripts/zone-axis scripts/create-mtz scripts/frequency \ + scripts/i0-analysis scripts/mtz2hkl scripts/sequence-image \ + scripts/test-facetron scripts/zone-axes \ + scripts/alternate-stream scripts/README scripts/indexing-rate \ + scripts/observed-peak-rate scripts/cell-please \ + scripts/check-hkl-completeness.gp scripts/check-hkl-quality.gp \ + scripts/compare-hkl.gp + +EXTRA_DIST += scripts/check-near-bragg scripts/double-hit scripts/random-image \ + scripts/stream-split scripts/wibbletron scripts/zone-axis \ + scripts/create-mtz scripts/frequency scripts/i0-analysis \ + scripts/mtz2hkl scripts/sequence-image scripts/test-facetron \ + scripts/zone-axes scripts/alternate-stream scripts/README \ + scripts/indexing-rate scripts/observed-peak-rate \ + scripts/cell-please scripts/check-hkl-completeness.gp \ + scripts/check-hkl-quality.gp scripts/compare-hkl.gp diff --git a/Makefile.in b/Makefile.in index 0c556938..467a2308 100644 --- a/Makefile.in +++ b/Makefile.in @@ -14,6 +14,8 @@ # PARTICULAR PURPOSE. @SET_MAKE@ + + VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ @@ -33,13 +35,23 @@ PRE_UNINSTALL = : POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ +bin_PROGRAMS = src/pattern_sim$(EXEEXT) src/process_hkl$(EXEEXT) \ + src/get_hkl$(EXEEXT) src/indexamajig$(EXEEXT) \ + src/compare_hkl$(EXEEXT) src/powder_plot$(EXEEXT) \ + src/render_hkl$(EXEEXT) src/calibrate_detector$(EXEEXT) \ + src/facetron$(EXEEXT) src/reintegrate$(EXEEXT) \ + src/estimate_background$(EXEEXT) src/check_hkl$(EXEEXT) \ + $(am__EXEEXT_1) $(am__EXEEXT_2) +@HAVE_GTK_TRUE@am__append_1 = src/hdfsee +@HAVE_CAIRO_TRUE@am__append_2 = src/cubeit +@HAVE_OPENCL_TRUE@am__append_3 = src/diffraction-gpu.c src/cl-utils.c +@HAVE_OPENCL_TRUE@am__append_4 = src/diffraction-gpu.c src/cl-utils.c subdir = . DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \ $(srcdir)/Makefile.in $(srcdir)/config.h.in \ $(top_srcdir)/configure AUTHORS COPYING ChangeLog INSTALL NEWS \ - build-aux/config.guess build-aux/config.sub build-aux/depcomp \ - build-aux/install-sh build-aux/missing config.guess config.sub \ - depcomp install-sh missing + build-aux/compile build-aux/config.guess build-aux/config.sub \ + build-aux/depcomp build-aux/install-sh build-aux/missing ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/00gnulib.m4 \ $(top_srcdir)/m4/extensions.m4 \ @@ -59,14 +71,186 @@ mkinstalldirs = $(install_sh) -d CONFIG_HEADER = config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +@HAVE_GTK_TRUE@am__EXEEXT_1 = src/hdfsee$(EXEEXT) +@HAVE_CAIRO_TRUE@am__EXEEXT_2 = src/cubeit$(EXEEXT) +am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(crystfeldir)" \ + "$(DESTDIR)$(crystfeldocdir)" "$(DESTDIR)$(hdfseedir)" \ + "$(DESTDIR)$(scriptdir)" +PROGRAMS = $(bin_PROGRAMS) +am__dirstamp = $(am__leading_dot)dirstamp +am_src_calibrate_detector_OBJECTS = src/calibrate_detector.$(OBJEXT) \ + src/utils.$(OBJEXT) src/hdf5-file.$(OBJEXT) \ + src/image.$(OBJEXT) src/filters.$(OBJEXT) src/peaks.$(OBJEXT) \ + src/detector.$(OBJEXT) src/cell.$(OBJEXT) \ + src/thread-pool.$(OBJEXT) +src_calibrate_detector_OBJECTS = $(am_src_calibrate_detector_OBJECTS) +src_calibrate_detector_LDADD = $(LDADD) +src_calibrate_detector_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_check_hkl_OBJECTS = src/check_hkl.$(OBJEXT) src/sfac.$(OBJEXT) \ + src/cell.$(OBJEXT) src/utils.$(OBJEXT) \ + src/reflections.$(OBJEXT) src/statistics.$(OBJEXT) \ + src/symmetry.$(OBJEXT) +src_check_hkl_OBJECTS = $(am_src_check_hkl_OBJECTS) +src_check_hkl_LDADD = $(LDADD) +src_check_hkl_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_compare_hkl_OBJECTS = src/compare_hkl.$(OBJEXT) \ + src/sfac.$(OBJEXT) src/cell.$(OBJEXT) src/utils.$(OBJEXT) \ + src/reflections.$(OBJEXT) src/statistics.$(OBJEXT) \ + src/symmetry.$(OBJEXT) +src_compare_hkl_OBJECTS = $(am_src_compare_hkl_OBJECTS) +src_compare_hkl_LDADD = $(LDADD) +src_compare_hkl_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am__src_cubeit_SOURCES_DIST = src/cubeit.c src/cell.c src/hdf5-file.c \ + src/utils.c src/detector.c src/render.c src/filters.c \ + src/image.c src/symmetry.c src/stream.c src/thread-pool.c +@HAVE_CAIRO_TRUE@am_src_cubeit_OBJECTS = src/cubeit.$(OBJEXT) \ +@HAVE_CAIRO_TRUE@ src/cell.$(OBJEXT) src/hdf5-file.$(OBJEXT) \ +@HAVE_CAIRO_TRUE@ src/utils.$(OBJEXT) src/detector.$(OBJEXT) \ +@HAVE_CAIRO_TRUE@ src/render.$(OBJEXT) src/filters.$(OBJEXT) \ +@HAVE_CAIRO_TRUE@ src/image.$(OBJEXT) src/symmetry.$(OBJEXT) \ +@HAVE_CAIRO_TRUE@ src/stream.$(OBJEXT) \ +@HAVE_CAIRO_TRUE@ src/thread-pool.$(OBJEXT) +src_cubeit_OBJECTS = $(am_src_cubeit_OBJECTS) +src_cubeit_LDADD = $(LDADD) +src_cubeit_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_estimate_background_OBJECTS = \ + src/estimate_background.$(OBJEXT) src/stream.$(OBJEXT) \ + src/utils.$(OBJEXT) src/cell.$(OBJEXT) +src_estimate_background_OBJECTS = \ + $(am_src_estimate_background_OBJECTS) +src_estimate_background_LDADD = $(LDADD) +src_estimate_background_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_facetron_OBJECTS = src/facetron.$(OBJEXT) src/cell.$(OBJEXT) \ + src/hdf5-file.$(OBJEXT) src/utils.$(OBJEXT) \ + src/detector.$(OBJEXT) src/peaks.$(OBJEXT) src/image.$(OBJEXT) \ + src/geometry.$(OBJEXT) src/reflections.$(OBJEXT) \ + src/stream.$(OBJEXT) src/thread-pool.$(OBJEXT) \ + src/beam-parameters.$(OBJEXT) src/symmetry.$(OBJEXT) \ + src/post-refinement.$(OBJEXT) src/hrs-scaling.$(OBJEXT) +src_facetron_OBJECTS = $(am_src_facetron_OBJECTS) +src_facetron_LDADD = $(LDADD) +src_facetron_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_get_hkl_OBJECTS = src/get_hkl.$(OBJEXT) src/sfac.$(OBJEXT) \ + src/cell.$(OBJEXT) src/utils.$(OBJEXT) \ + src/reflections.$(OBJEXT) src/symmetry.$(OBJEXT) \ + src/beam-parameters.$(OBJEXT) +src_get_hkl_OBJECTS = $(am_src_get_hkl_OBJECTS) +src_get_hkl_LDADD = $(LDADD) +src_get_hkl_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am__src_hdfsee_SOURCES_DIST = src/hdfsee.c src/displaywindow.c \ + src/render.c src/hdf5-file.c src/utils.c src/image.c \ + src/filters.c +@HAVE_GTK_TRUE@am_src_hdfsee_OBJECTS = src/hdfsee.$(OBJEXT) \ +@HAVE_GTK_TRUE@ src/displaywindow.$(OBJEXT) \ +@HAVE_GTK_TRUE@ src/render.$(OBJEXT) src/hdf5-file.$(OBJEXT) \ +@HAVE_GTK_TRUE@ src/utils.$(OBJEXT) src/image.$(OBJEXT) \ +@HAVE_GTK_TRUE@ src/filters.$(OBJEXT) +src_hdfsee_OBJECTS = $(am_src_hdfsee_OBJECTS) +src_hdfsee_LDADD = $(LDADD) +src_hdfsee_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am__src_indexamajig_SOURCES_DIST = src/indexamajig.c src/hdf5-file.c \ + src/utils.c src/cell.c src/image.c src/peaks.c src/index.c \ + src/filters.c src/diffraction.c src/detector.c src/sfac.c \ + src/dirax.c src/mosflm.c src/reflections.c src/templates.c \ + src/symmetry.c src/geometry.c src/thread-pool.c \ + src/beam-parameters.c src/diffraction-gpu.c src/cl-utils.c +@HAVE_OPENCL_TRUE@am__objects_1 = src/diffraction-gpu.$(OBJEXT) \ +@HAVE_OPENCL_TRUE@ src/cl-utils.$(OBJEXT) +am_src_indexamajig_OBJECTS = src/indexamajig.$(OBJEXT) \ + src/hdf5-file.$(OBJEXT) src/utils.$(OBJEXT) src/cell.$(OBJEXT) \ + src/image.$(OBJEXT) src/peaks.$(OBJEXT) src/index.$(OBJEXT) \ + src/filters.$(OBJEXT) src/diffraction.$(OBJEXT) \ + src/detector.$(OBJEXT) src/sfac.$(OBJEXT) src/dirax.$(OBJEXT) \ + src/mosflm.$(OBJEXT) src/reflections.$(OBJEXT) \ + src/templates.$(OBJEXT) src/symmetry.$(OBJEXT) \ + src/geometry.$(OBJEXT) src/thread-pool.$(OBJEXT) \ + src/beam-parameters.$(OBJEXT) $(am__objects_1) +src_indexamajig_OBJECTS = $(am_src_indexamajig_OBJECTS) +src_indexamajig_LDADD = $(LDADD) +src_indexamajig_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am__src_pattern_sim_SOURCES_DIST = src/pattern_sim.c src/diffraction.c \ + src/utils.c src/image.c src/cell.c src/hdf5-file.c \ + src/detector.c src/sfac.c src/peaks.c src/reflections.c \ + src/beam-parameters.c src/symmetry.c src/diffraction-gpu.c \ + src/cl-utils.c +am_src_pattern_sim_OBJECTS = src/pattern_sim.$(OBJEXT) \ + src/diffraction.$(OBJEXT) src/utils.$(OBJEXT) \ + src/image.$(OBJEXT) src/cell.$(OBJEXT) src/hdf5-file.$(OBJEXT) \ + src/detector.$(OBJEXT) src/sfac.$(OBJEXT) src/peaks.$(OBJEXT) \ + src/reflections.$(OBJEXT) src/beam-parameters.$(OBJEXT) \ + src/symmetry.$(OBJEXT) $(am__objects_1) +src_pattern_sim_OBJECTS = $(am_src_pattern_sim_OBJECTS) +src_pattern_sim_LDADD = $(LDADD) +src_pattern_sim_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_powder_plot_OBJECTS = src/powder_plot.$(OBJEXT) \ + src/cell.$(OBJEXT) src/utils.$(OBJEXT) src/image.$(OBJEXT) \ + src/hdf5-file.$(OBJEXT) src/detector.$(OBJEXT) +src_powder_plot_OBJECTS = $(am_src_powder_plot_OBJECTS) +src_powder_plot_LDADD = $(LDADD) +src_powder_plot_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_process_hkl_OBJECTS = src/process_hkl.$(OBJEXT) \ + src/sfac.$(OBJEXT) src/statistics.$(OBJEXT) src/cell.$(OBJEXT) \ + src/utils.$(OBJEXT) src/reflections.$(OBJEXT) \ + src/symmetry.$(OBJEXT) src/stream.$(OBJEXT) \ + src/beam-parameters.$(OBJEXT) +src_process_hkl_OBJECTS = $(am_src_process_hkl_OBJECTS) +src_process_hkl_LDADD = $(LDADD) +src_process_hkl_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_reintegrate_OBJECTS = src/reintegrate.$(OBJEXT) \ + src/cell.$(OBJEXT) src/hdf5-file.$(OBJEXT) src/utils.$(OBJEXT) \ + src/detector.$(OBJEXT) src/peaks.$(OBJEXT) src/image.$(OBJEXT) \ + src/stream.$(OBJEXT) src/index.$(OBJEXT) src/dirax.$(OBJEXT) \ + src/mosflm.$(OBJEXT) src/templates.$(OBJEXT) \ + src/geometry.$(OBJEXT) src/symmetry.$(OBJEXT) \ + src/thread-pool.$(OBJEXT) +src_reintegrate_OBJECTS = $(am_src_reintegrate_OBJECTS) +src_reintegrate_LDADD = $(LDADD) +src_reintegrate_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +am_src_render_hkl_OBJECTS = src/render_hkl.$(OBJEXT) \ + src/cell.$(OBJEXT) src/reflections.$(OBJEXT) \ + src/utils.$(OBJEXT) src/povray.$(OBJEXT) \ + src/symmetry.$(OBJEXT) src/render.$(OBJEXT) \ + src/hdf5-file.$(OBJEXT) src/image.$(OBJEXT) \ + src/filters.$(OBJEXT) +src_render_hkl_OBJECTS = $(am_src_render_hkl_OBJECTS) +src_render_hkl_LDADD = $(LDADD) +src_render_hkl_DEPENDENCIES = $(top_builddir)/lib/libgnu.a +DEFAULT_INCLUDES = -I.@am__isrc@ +depcomp = $(SHELL) $(top_srcdir)/build-aux/depcomp +am__depfiles_maybe = depfiles +am__mv = mv -f +COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +AM_V_CC = $(am__v_CC_$(V)) +am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) +am__v_CC_0 = @echo " CC " $@; AM_V_at = $(am__v_at_$(V)) am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) am__v_at_0 = @ -SOURCES = -DIST_SOURCES = +CCLD = $(CC) +LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@ +AM_V_CCLD = $(am__v_CCLD_$(V)) +am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) +am__v_CCLD_0 = @echo " CCLD " $@; +AM_V_GEN = $(am__v_GEN_$(V)) +am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) +am__v_GEN_0 = @echo " GEN " $@; +SOURCES = $(src_calibrate_detector_SOURCES) $(src_check_hkl_SOURCES) \ + $(src_compare_hkl_SOURCES) $(src_cubeit_SOURCES) \ + $(src_estimate_background_SOURCES) $(src_facetron_SOURCES) \ + $(src_get_hkl_SOURCES) $(src_hdfsee_SOURCES) \ + $(src_indexamajig_SOURCES) $(src_pattern_sim_SOURCES) \ + $(src_powder_plot_SOURCES) $(src_process_hkl_SOURCES) \ + $(src_reintegrate_SOURCES) $(src_render_hkl_SOURCES) +DIST_SOURCES = $(src_calibrate_detector_SOURCES) \ + $(src_check_hkl_SOURCES) $(src_compare_hkl_SOURCES) \ + $(am__src_cubeit_SOURCES_DIST) \ + $(src_estimate_background_SOURCES) $(src_facetron_SOURCES) \ + $(src_get_hkl_SOURCES) $(am__src_hdfsee_SOURCES_DIST) \ + $(am__src_indexamajig_SOURCES_DIST) \ + $(am__src_pattern_sim_SOURCES_DIST) $(src_powder_plot_SOURCES) \ + $(src_process_hkl_SOURCES) $(src_reintegrate_SOURCES) \ + $(src_render_hkl_SOURCES) RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ html-recursive info-recursive install-data-recursive \ install-dvi-recursive install-exec-recursive \ @@ -74,6 +258,29 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; +am__vpath_adj = case $$p in \ + $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ + *) f=$$p;; \ + esac; +am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`; +am__install_max = 40 +am__nobase_strip_setup = \ + srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'` +am__nobase_strip = \ + for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||" +am__nobase_list = 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src/reflections.c src/statistics.c src/symmetry.c + +src_powder_plot_SOURCES = src/powder_plot.c src/cell.c src/utils.c src/image.c \ + src/hdf5-file.c src/detector.c + +src_render_hkl_SOURCES = src/render_hkl.c src/cell.c src/reflections.c src/utils.c \ + src/povray.c src/symmetry.c src/render.c src/hdf5-file.c \ + src/image.c src/filters.c + +src_calibrate_detector_SOURCES = src/calibrate_detector.c src/utils.c \ + src/hdf5-file.c src/image.c src/filters.c \ + src/peaks.c src/detector.c src/cell.c \ + src/thread-pool.c + +src_facetron_SOURCES = src/facetron.c src/cell.c src/hdf5-file.c src/utils.c \ + src/detector.c src/peaks.c src/image.c src/geometry.c \ + src/reflections.c src/stream.c src/thread-pool.c \ + src/beam-parameters.c src/symmetry.c src/post-refinement.c \ + src/hrs-scaling.c + +@HAVE_CAIRO_TRUE@src_cubeit_SOURCES = src/cubeit.c src/cell.c src/hdf5-file.c src/utils.c \ +@HAVE_CAIRO_TRUE@ src/detector.c src/render.c src/filters.c src/image.c \ +@HAVE_CAIRO_TRUE@ src/symmetry.c src/stream.c src/thread-pool.c + +src_reintegrate_SOURCES = src/reintegrate.c src/cell.c src/hdf5-file.c src/utils.c \ + src/detector.c src/peaks.c src/image.c src/stream.c \ + src/index.c src/dirax.c src/mosflm.c src/templates.c \ + src/geometry.c src/symmetry.c src/thread-pool.c + +src_estimate_background_SOURCES = src/estimate_background.c src/stream.c \ + src/utils.c src/cell.c + +INCLUDES = "-I$(top_srcdir)/data" +hdfseedir = $(datadir)/hdfsee +hdfsee_DATA = data/displaywindow.ui +crystfeldir = $(datadir)/crystfel +crystfel_DATA = data/diffraction.cl data/defs.h data/sfac/Ca.nff \ + data/sfac/C.nff data/sfac/Fe.nff data/sfac/H.nff \ + data/sfac/Mg.nff data/sfac/N.nff data/sfac/O.nff \ + data/sfac/P.nff data/sfac/S.nff data/sfac/f0_WaasKirf.dat + +crystfeldocdir = $(docdir) +crystfeldoc_DATA = doc/geometry.txt doc/indexamajig.txt doc/pattern_sim.txt \ + doc/process_hkl.txt doc/symmetry.txt \ + doc/twin-calculator.pdf \ + doc/0-INDEX doc/examples/lcls-dec.geom \ + 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+@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/compare_hkl.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/cubeit.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/detector.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/diffraction-gpu.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/diffraction.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/dirax.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/displaywindow.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/estimate_background.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/facetron.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/filters.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/geometry.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/get_hkl.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/hdf5-file.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/hdfsee.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/hrs-scaling.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/image.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/index.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/indexamajig.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/mosflm.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/pattern_sim.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/peaks.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/post-refinement.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/povray.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/powder_plot.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/process_hkl.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/reflections.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/reintegrate.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/render.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/render_hkl.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/sfac.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/statistics.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/stream.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/symmetry.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/templates.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/thread-pool.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@src/$(DEPDIR)/utils.Po@am__quote@ + +.c.o: +@am__fastdepCC_TRUE@ $(AM_V_CC)depbase=`echo $@ | sed 's|[^/]*$$|$(DEPDIR)/&|;s|\.o$$||'`;\ +@am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $$depbase.Tpo -c -o $@ $< &&\ +@am__fastdepCC_TRUE@ $(am__mv) $$depbase.Tpo $$depbase.Po +@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ +@am__fastdepCC_FALSE@ $(COMPILE) -c -o $@ $< + +.c.obj: +@am__fastdepCC_TRUE@ $(AM_V_CC)depbase=`echo $@ | sed 's|[^/]*$$|$(DEPDIR)/&|;s|\.obj$$||'`;\ +@am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $$depbase.Tpo -c -o $@ `$(CYGPATH_W) '$<'` &&\ +@am__fastdepCC_TRUE@ $(am__mv) $$depbase.Tpo $$depbase.Po +@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ +@am__fastdepCC_FALSE@ $(COMPILE) -c -o $@ `$(CYGPATH_W) '$<'` +install-crystfelDATA: $(crystfel_DATA) + @$(NORMAL_INSTALL) + test -z "$(crystfeldir)" || $(MKDIR_P) "$(DESTDIR)$(crystfeldir)" + @list='$(crystfel_DATA)'; test -n "$(crystfeldir)" || list=; \ + for p in $$list; do \ + if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ + echo "$$d$$p"; \ + done | $(am__base_list) | \ + while read files; do \ + echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(crystfeldir)'"; \ + $(INSTALL_DATA) $$files "$(DESTDIR)$(crystfeldir)" || exit $$?; \ + done + +uninstall-crystfelDATA: + @$(NORMAL_UNINSTALL) + @list='$(crystfel_DATA)'; test -n "$(crystfeldir)" || list=; \ + files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ + test -n "$$files" || exit 0; \ + echo " ( cd '$(DESTDIR)$(crystfeldir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(crystfeldir)" && rm -f $$files +install-crystfeldocDATA: $(crystfeldoc_DATA) + @$(NORMAL_INSTALL) + test -z "$(crystfeldocdir)" || $(MKDIR_P) "$(DESTDIR)$(crystfeldocdir)" + @list='$(crystfeldoc_DATA)'; test -n "$(crystfeldocdir)" || list=; \ + for p in $$list; do \ + if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ + echo "$$d$$p"; \ + done | $(am__base_list) | \ + while read files; do \ + echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(crystfeldocdir)'"; \ + $(INSTALL_DATA) $$files "$(DESTDIR)$(crystfeldocdir)" || exit $$?; \ + done + +uninstall-crystfeldocDATA: + @$(NORMAL_UNINSTALL) + @list='$(crystfeldoc_DATA)'; test -n "$(crystfeldocdir)" || list=; \ + files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ + test -n "$$files" || exit 0; \ + echo " ( cd '$(DESTDIR)$(crystfeldocdir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(crystfeldocdir)" && rm -f $$files +install-hdfseeDATA: $(hdfsee_DATA) + @$(NORMAL_INSTALL) + test -z "$(hdfseedir)" || $(MKDIR_P) "$(DESTDIR)$(hdfseedir)" + @list='$(hdfsee_DATA)'; test -n "$(hdfseedir)" || list=; \ + for p in $$list; do \ + if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ + echo "$$d$$p"; \ + done | $(am__base_list) | \ + while read files; do \ + echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(hdfseedir)'"; \ + $(INSTALL_DATA) $$files "$(DESTDIR)$(hdfseedir)" || exit $$?; \ + done + +uninstall-hdfseeDATA: + @$(NORMAL_UNINSTALL) + @list='$(hdfsee_DATA)'; test -n "$(hdfseedir)" || list=; \ + files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ + test -n "$$files" || exit 0; \ + echo " ( cd '$(DESTDIR)$(hdfseedir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(hdfseedir)" && rm -f $$files +install-scriptDATA: $(script_DATA) + @$(NORMAL_INSTALL) + test -z "$(scriptdir)" || $(MKDIR_P) "$(DESTDIR)$(scriptdir)" + @list='$(script_DATA)'; test -n "$(scriptdir)" || list=; \ + for p in $$list; do \ + if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ + echo "$$d$$p"; \ + done | $(am__base_list) | \ + while read files; do \ + echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(scriptdir)'"; \ + $(INSTALL_DATA) $$files "$(DESTDIR)$(scriptdir)" || exit $$?; \ + done + +uninstall-scriptDATA: + @$(NORMAL_UNINSTALL) + @list='$(script_DATA)'; test -n "$(scriptdir)" || list=; \ + files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \ + test -n "$$files" || exit 0; \ + echo " ( cd '$(DESTDIR)$(scriptdir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(scriptdir)" && rm -f $$files # This directory's subdirectories are mostly independent; you can cd # into them and run `make' without going through this Makefile. @@ -679,9 +1351,12 @@ distcleancheck: distclean exit 1; } >&2 check-am: all-am check: check-recursive -all-am: Makefile config.h +all-am: Makefile $(PROGRAMS) $(DATA) config.h installdirs: installdirs-recursive installdirs-am: + for dir in "$(DESTDIR)$(bindir)" "$(DESTDIR)$(crystfeldir)" "$(DESTDIR)$(crystfeldocdir)" "$(DESTDIR)$(hdfseedir)" "$(DESTDIR)$(scriptdir)"; do \ + test -z "$$dir" || $(MKDIR_P) "$$dir"; \ + done install: install-recursive install-exec: install-exec-recursive install-data: install-data-recursive @@ -703,18 +1378,22 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) + -rm -f src/$(DEPDIR)/$(am__dirstamp) + -rm -f src/$(am__dirstamp) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." clean: clean-recursive -clean-am: clean-generic mostlyclean-am +clean-am: clean-binPROGRAMS clean-generic mostlyclean-am distclean: distclean-recursive -rm -f $(am__CONFIG_DISTCLEAN_FILES) + -rm -rf src/$(DEPDIR) -rm -f Makefile -distclean-am: clean-am distclean-generic distclean-hdr distclean-tags +distclean-am: clean-am distclean-compile distclean-generic \ + distclean-hdr distclean-tags dvi: dvi-recursive @@ -728,13 +1407,14 @@ info: info-recursive info-am: -install-data-am: +install-data-am: install-crystfelDATA install-crystfeldocDATA \ + install-hdfseeDATA install-scriptDATA install-dvi: install-dvi-recursive install-dvi-am: -install-exec-am: +install-exec-am: install-binPROGRAMS install-html: install-html-recursive @@ -759,12 +1439,13 @@ installcheck-am: maintainer-clean: maintainer-clean-recursive -rm -f $(am__CONFIG_DISTCLEAN_FILES) -rm -rf $(top_srcdir)/autom4te.cache + -rm -rf src/$(DEPDIR) -rm -f Makefile maintainer-clean-am: distclean-am maintainer-clean-generic mostlyclean: mostlyclean-recursive -mostlyclean-am: mostlyclean-generic +mostlyclean-am: mostlyclean-compile mostlyclean-generic pdf: pdf-recursive @@ -774,25 +1455,33 @@ ps: ps-recursive ps-am: -uninstall-am: +uninstall-am: uninstall-binPROGRAMS uninstall-crystfelDATA \ + uninstall-crystfeldocDATA uninstall-hdfseeDATA \ + uninstall-scriptDATA .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) all \ ctags-recursive install-am install-strip tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ - all all-am am--refresh check check-am clean clean-generic \ - ctags ctags-recursive dist dist-all dist-bzip2 dist-gzip \ - dist-lzma dist-shar dist-tarZ dist-xz dist-zip distcheck \ - distclean distclean-generic distclean-hdr distclean-tags \ - distcleancheck distdir distuninstallcheck dvi dvi-am html \ - html-am info info-am install install-am install-data \ - install-data-am install-dvi install-dvi-am install-exec \ - install-exec-am install-html install-html-am install-info \ + all all-am am--refresh check check-am clean clean-binPROGRAMS \ + clean-generic ctags ctags-recursive dist dist-all dist-bzip2 \ + dist-gzip dist-lzma dist-shar dist-tarZ dist-xz dist-zip \ + distcheck distclean distclean-compile distclean-generic \ + distclean-hdr distclean-tags distcleancheck distdir \ + distuninstallcheck dvi dvi-am html html-am info info-am \ + install install-am install-binPROGRAMS install-crystfelDATA \ + install-crystfeldocDATA install-data install-data-am \ + install-dvi install-dvi-am install-exec install-exec-am \ + install-hdfseeDATA install-html install-html-am install-info \ install-info-am install-man install-pdf install-pdf-am \ - install-ps install-ps-am install-strip installcheck \ - installcheck-am installdirs installdirs-am maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-generic pdf \ - pdf-am ps ps-am tags tags-recursive uninstall uninstall-am + install-ps install-ps-am install-scriptDATA install-strip \ + installcheck installcheck-am installdirs installdirs-am \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-compile mostlyclean-generic pdf pdf-am ps ps-am \ + tags tags-recursive uninstall uninstall-am \ + uninstall-binPROGRAMS uninstall-crystfelDATA \ + uninstall-crystfeldocDATA uninstall-hdfseeDATA \ + uninstall-scriptDATA # Tell versions [3.59,3.63) of GNU make to not export all variables. @@ -1004,6 +1004,41 @@ AC_MSG_RESULT([$_am_result]) rm -f confinc confmf ]) +# Copyright (C) 1999, 2000, 2001, 2003, 2004, 2005, 2008 +# Free Software Foundation, Inc. +# +# This file is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# serial 6 + +# AM_PROG_CC_C_O +# -------------- +# Like AC_PROG_CC_C_O, but changed for automake. +AC_DEFUN([AM_PROG_CC_C_O], +[AC_REQUIRE([AC_PROG_CC_C_O])dnl +AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl +AC_REQUIRE_AUX_FILE([compile])dnl +# FIXME: we rely on the cache variable name because +# there is no other way. +set dummy $CC +am_cc=`echo $[2] | sed ['s/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/']` +eval am_t=\$ac_cv_prog_cc_${am_cc}_c_o +if test "$am_t" != yes; then + # Losing compiler, so override with the script. + # FIXME: It is wrong to rewrite CC. + # But if we don't then we get into trouble of one sort or another. + # A longer-term fix would be to have automake use am__CC in this case, + # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" + CC="$am_aux_dir/compile $CC" +fi +dnl Make sure AC_PROG_CC is never called again, or it will override our +dnl setting of CC. +m4_define([AC_PROG_CC], + [m4_fatal([AC_PROG_CC cannot be called after AM_PROG_CC_C_O])]) +]) + # Fake the existence of programs that GNU maintainers use. -*- Autoconf -*- # Copyright (C) 1997, 1999, 2000, 2001, 2003, 2004, 2005, 2008 diff --git a/build-aux/compile b/build-aux/compile new file mode 100755 index 00000000..c0096a7b --- /dev/null +++ b/build-aux/compile @@ -0,0 +1,143 @@ +#! /bin/sh +# Wrapper for compilers which do not understand `-c -o'. + +scriptversion=2009-10-06.20; # UTC + +# Copyright (C) 1999, 2000, 2003, 2004, 2005, 2009 Free Software +# Foundation, Inc. +# Written by Tom Tromey <tromey@cygnus.com>. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation; either version 2, or (at your option) +# any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + +# As a special exception to the GNU General Public License, if you +# distribute this file as part of a program that contains a +# configuration script generated by Autoconf, you may include it under +# the same distribution terms that you use for the rest of that program. + +# This file is maintained in Automake, please report +# bugs to <bug-automake@gnu.org> or send patches to +# <automake-patches@gnu.org>. + +case $1 in + '') + echo "$0: No command. Try \`$0 --help' for more information." 1>&2 + exit 1; + ;; + -h | --h*) + cat <<\EOF +Usage: compile [--help] [--version] PROGRAM [ARGS] + +Wrapper for compilers which do not understand `-c -o'. +Remove `-o dest.o' from ARGS, run PROGRAM with the remaining +arguments, and rename the output as expected. + +If you are trying to build a whole package this is not the +right script to run: please start by reading the file `INSTALL'. + +Report bugs to <bug-automake@gnu.org>. +EOF + exit $? + ;; + -v | --v*) + echo "compile $scriptversion" + exit $? + ;; +esac + +ofile= +cfile= +eat= + +for arg +do + if test -n "$eat"; then + eat= + else + case $1 in + -o) + # configure might choose to run compile as `compile cc -o foo foo.c'. + # So we strip `-o arg' only if arg is an object. + eat=1 + case $2 in + *.o | *.obj) + ofile=$2 + ;; + *) + set x "$@" -o "$2" + shift + ;; + esac + ;; + *.c) + cfile=$1 + set x "$@" "$1" + shift + ;; + *) + set x "$@" "$1" + shift + ;; + esac + fi + shift +done + +if test -z "$ofile" || test -z "$cfile"; then + # If no `-o' option was seen then we might have been invoked from a + # pattern rule where we don't need one. That is ok -- this is a + # normal compilation that the losing compiler can handle. If no + # `.c' file was seen then we are probably linking. That is also + # ok. + exec "$@" +fi + +# Name of file we expect compiler to create. +cofile=`echo "$cfile" | sed 's|^.*[\\/]||; s|^[a-zA-Z]:||; s/\.c$/.o/'` + +# Create the lock directory. +# Note: use `[/\\:.-]' here to ensure that we don't use the same name +# that we are using for the .o file. Also, base the name on the expected +# object file name, since that is what matters with a parallel build. +lockdir=`echo "$cofile" | sed -e 's|[/\\:.-]|_|g'`.d +while true; do + if mkdir "$lockdir" >/dev/null 2>&1; then + break + fi + sleep 1 +done +# FIXME: race condition here if user kills between mkdir and trap. +trap "rmdir '$lockdir'; exit 1" 1 2 15 + +# Run the compile. +"$@" +ret=$? + +if test -f "$cofile"; then + test "$cofile" = "$ofile" || mv "$cofile" "$ofile" +elif test -f "${cofile}bj"; then + test "${cofile}bj" = "$ofile" || mv "${cofile}bj" "$ofile" +fi + +rmdir "$lockdir" +exit $ret + +# Local Variables: +# mode: shell-script +# sh-indentation: 2 +# eval: (add-hook 'write-file-hooks 'time-stamp) +# time-stamp-start: "scriptversion=" +# time-stamp-format: "%:y-%02m-%02d.%02H" +# time-stamp-time-zone: "UTC" +# time-stamp-end: "; # UTC" +# End: diff --git a/config.h.in b/config.h.in index a1c63a32..0f412281 100644 --- a/config.h.in +++ b/config.h.in @@ -161,6 +161,9 @@ /* Define to a substitute value for mmap()'s MAP_ANONYMOUS flag. */ #undef MAP_ANONYMOUS +/* Define to 1 if your C compiler doesn't accept -c and -o together. */ +#undef NO_MINUS_C_MINUS_O + /* Name of package */ #undef PACKAGE @@ -700,6 +700,8 @@ GNULIB_MEMCHR GL_COND_LIBTOOL_FALSE GL_COND_LIBTOOL_TRUE LIBOBJS +AM_BACKSLASH +AM_DEFAULT_VERBOSITY LN_S EGREP GREP @@ -752,8 +754,6 @@ am__isrc INSTALL_DATA INSTALL_SCRIPT INSTALL_PROGRAM -AM_BACKSLASH -AM_DEFAULT_VERBOSITY target_alias host_alias build_alias @@ -795,8 +795,8 @@ SHELL' ac_subst_files='' ac_user_opts=' enable_option_checking -enable_silent_rules enable_dependency_tracking +enable_silent_rules with_hdf5 with_gsl enable_opencl @@ -1440,10 +1440,10 @@ Optional Features: --disable-option-checking ignore unrecognized --enable/--with options --disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no) --enable-FEATURE[=ARG] include FEATURE [ARG=yes] - --enable-silent-rules less verbose build output (undo: `make V=1') - --disable-silent-rules verbose build output (undo: `make V=0') --disable-dependency-tracking speeds up one-time build --enable-dependency-tracking do not reject slow dependency extractors + --enable-silent-rules less verbose build output (undo: `make V=1') + --disable-silent-rules verbose build output (undo: `make V=0') --enable-opencl Enable the use of OpenCL --disable-gtk Disable GTK+/GLib --disable-gtktest do not try to compile and run a test GTK+ program @@ -2304,19 +2304,6 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $ ac_compiler_gnu=$ac_cv_c_compiler_gnu -# Check whether --enable-silent-rules was given. -if test "${enable_silent_rules+set}" = set; then : - enableval=$enable_silent_rules; -fi - -case $enable_silent_rules in -yes) AM_DEFAULT_VERBOSITY=0;; -no) AM_DEFAULT_VERBOSITY=1;; -*) AM_DEFAULT_VERBOSITY=0;; -esac -AM_BACKSLASH='\' - -VERSION=0.2.0 ac_aux_dir= for ac_dir in build-aux "$srcdir"/build-aux; do for ac_t in install-sh install.sh shtool; do @@ -2340,7 +2327,6 @@ ac_config_sub="$SHELL $ac_aux_dir/config.sub" # Please don't use this var. ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var. - ac_config_headers="$ac_config_headers config.h" am__api_version='1.11' @@ -2781,8 +2767,8 @@ fi # Define the identity of the package. - PACKAGE=crystfel - VERSION="$VERSION" + PACKAGE='crystfel' + VERSION='0.2.0' cat >>confdefs.h <<_ACEOF @@ -4456,6 +4442,132 @@ $as_echo "$ac_cv_safe_to_define___extensions__" >&6; } # Code from module strnlen: # Code from module warn-on-use: +if test "x$CC" != xcc; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC and cc understand -c and -o together" >&5 +$as_echo_n "checking whether $CC and cc understand -c and -o together... " >&6; } +else + { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether cc understands -c and -o together" >&5 +$as_echo_n "checking whether cc understands -c and -o together... " >&6; } +fi +set dummy $CC; ac_cc=`$as_echo "$2" | + sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +if { as_var=ac_cv_prog_cc_${ac_cc}_c_o; eval "test \"\${$as_var+set}\" = set"; }; then : + $as_echo_n "(cached) " >&6 +else + cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +int +main () +{ + + ; + return 0; +} +_ACEOF +# Make sure it works both with $CC and with simple cc. +# We do the test twice because some compilers refuse to overwrite an +# existing .o file with -o, though they will create one. +ac_try='$CC -c conftest.$ac_ext -o conftest2.$ac_objext >&5' +rm -f conftest2.* +if { { case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +$as_echo "$ac_try_echo"; } >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } && + test -f conftest2.$ac_objext && { { case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +$as_echo "$ac_try_echo"; } >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; +then + eval ac_cv_prog_cc_${ac_cc}_c_o=yes + if test "x$CC" != xcc; then + # Test first that cc exists at all. + if { ac_try='cc -c conftest.$ac_ext >&5' + { { case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +$as_echo "$ac_try_echo"; } >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; }; then + ac_try='cc -c conftest.$ac_ext -o conftest2.$ac_objext >&5' + rm -f conftest2.* + if { { case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +$as_echo "$ac_try_echo"; } >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; } && + test -f conftest2.$ac_objext && { { case "(($ac_try" in + *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; + *) ac_try_echo=$ac_try;; +esac +eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" +$as_echo "$ac_try_echo"; } >&5 + (eval "$ac_try") 2>&5 + ac_status=$? + $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 + test $ac_status = 0; }; + then + # cc works too. + : + else + # cc exists but doesn't like -o. + eval ac_cv_prog_cc_${ac_cc}_c_o=no + fi + fi + fi +else + eval ac_cv_prog_cc_${ac_cc}_c_o=no +fi +rm -f core conftest* + +fi +if eval test \$ac_cv_prog_cc_${ac_cc}_c_o = yes; then + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +$as_echo "yes" >&6; } +else + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 +$as_echo "no" >&6; } + +$as_echo "#define NO_MINUS_C_MINUS_O 1" >>confdefs.h + +fi + +# FIXME: we rely on the cache variable name because +# there is no other way. +set dummy $CC +am_cc=`echo $2 | sed 's/[^a-zA-Z0-9_]/_/g;s/^[0-9]/_/'` +eval am_t=\$ac_cv_prog_cc_${am_cc}_c_o +if test "$am_t" != yes; then + # Losing compiler, so override with the script. + # FIXME: It is wrong to rewrite CC. + # But if we don't then we get into trouble of one sort or another. + # A longer-term fix would be to have automake use am__CC in this case, + # and then we could set am__CC="\$(top_srcdir)/compile \$(CC)" + CC="$am_aux_dir/compile $CC" +fi + + for ac_prog in gawk mawk nawk awk do # Extract the first word of "$ac_prog", so it can be a program name with args. @@ -4602,6 +4714,17 @@ else RANLIB="$ac_cv_prog_RANLIB" fi +# Check whether --enable-silent-rules was given. +if test "${enable_silent_rules+set}" = set; then : + enableval=$enable_silent_rules; +fi + +case $enable_silent_rules in +yes) AM_DEFAULT_VERBOSITY=0;; +no) AM_DEFAULT_VERBOSITY=1;; +*) AM_DEFAULT_VERBOSITY=0;; +esac +AM_BACKSLASH='\' { $as_echo "$as_me:${as_lineno-$LINENO}: checking for ANSI C header files" >&5 @@ -6797,9 +6920,7 @@ CFLAGS="$CFLAGS $LIBTIFF_CFLAGS -D_GNU_SOURCE $libPNG_CFLAGS $Cairo_CFLAGS" LIBS="$LIBS $HDF5_LIBS -lm -lz $GSL_LIBS $GTK_LIBS $OPENCL_LIBS -pthread" LIBS="$LIBS $LIBTIFF_LIBS $libPNG_LIBS $Cairo_LIBS" -ac_config_files="$ac_config_files Makefile src/Makefile data/Makefile doc/Makefile" - -ac_config_files="$ac_config_files scripts/Makefile doc/examples/Makefile lib/Makefile" +ac_config_files="$ac_config_files Makefile lib/Makefile" cat >confcache <<\_ACEOF # This file is a shell script that caches the results of configure @@ -7562,11 +7683,6 @@ do "config.h") CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;; "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;; "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;; - "src/Makefile") CONFIG_FILES="$CONFIG_FILES src/Makefile" ;; - "data/Makefile") CONFIG_FILES="$CONFIG_FILES data/Makefile" ;; - "doc/Makefile") CONFIG_FILES="$CONFIG_FILES doc/Makefile" ;; - "scripts/Makefile") CONFIG_FILES="$CONFIG_FILES scripts/Makefile" ;; - "doc/examples/Makefile") CONFIG_FILES="$CONFIG_FILES doc/examples/Makefile" ;; "lib/Makefile") CONFIG_FILES="$CONFIG_FILES lib/Makefile" ;; *) as_fn_error "invalid argument: \`$ac_config_target'" "$LINENO" 5;; diff --git a/configure.ac b/configure.ac index 499957cf..e4fb4bed 100644 --- a/configure.ac +++ b/configure.ac @@ -1,20 +1,18 @@ dnl Process this file with autoconf to produce a configure script. AC_INIT(crystfel, 0.2.0, taw@physics.org) -AM_SILENT_RULES([yes]) -VERSION=AC_PACKAGE_VERSION AC_CONFIG_AUX_DIR([build-aux]) - AM_CONFIG_HEADER(config.h) -AM_INIT_AUTOMAKE(crystfel, "$VERSION") +AM_INIT_AUTOMAKE([subdir-objects]) AC_PROG_CC gl_EARLY +AM_PROG_CC_C_O AC_PROG_AWK AC_PROG_INSTALL AC_PROG_LN_S AC_PROG_RANLIB - +AM_SILENT_RULES([yes]) AC_HEADER_STDC AC_CHECK_HEADERS([fcntl.h stdlib.h unistd.h]) @@ -151,6 +149,5 @@ CFLAGS="$CFLAGS $LIBTIFF_CFLAGS -D_GNU_SOURCE $libPNG_CFLAGS $Cairo_CFLAGS" LIBS="$LIBS $HDF5_LIBS -lm -lz $GSL_LIBS $GTK_LIBS $OPENCL_LIBS -pthread" LIBS="$LIBS $LIBTIFF_LIBS $libPNG_LIBS $Cairo_LIBS" -AC_CONFIG_FILES(Makefile src/Makefile data/Makefile doc/Makefile) -AC_CONFIG_FILES(scripts/Makefile doc/examples/Makefile lib/Makefile) +AC_CONFIG_FILES(Makefile lib/Makefile) AC_OUTPUT diff --git a/data/Makefile.am b/data/Makefile.am deleted file mode 100644 index 75c18c64..00000000 --- a/data/Makefile.am +++ /dev/null @@ -1,11 +0,0 @@ -hdfseedir = 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