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-rwxr-xr-xscripts/install-indexers165
1 files changed, 119 insertions, 46 deletions
diff --git a/scripts/install-indexers b/scripts/install-indexers
index 553ab14a..f7a36375 100755
--- a/scripts/install-indexers
+++ b/scripts/install-indexers
@@ -5,7 +5,45 @@
CFPREFIX=/usr
# Set the location of syminfo.lib here
-SYMINFO=/usr/share/ccp4/syminfo.lib
+SYMINFO=/usr/local/share/ccp4/syminfo.lib
+
+SYS=`uname -sm`
+if [ "$SYS" == "Linux x86_64" ]; then
+ MOSFLM=mosflm-linux-64-noX11
+ DIRAX=dirax1.17-Linux-x86_64-static.tar.Z
+ DIRAX_TAR_ARGS=-xZf
+ XDS=XDS-INTEL64_Linux_x86_64
+ PLATFORM="Linux x86_64"
+fi
+
+if [ "$SYS" == "Linux i686" ]; then
+ MOSFLM=mosflm-linux-32-noX11
+ DIRAX=dirax1.17-Linux-i686-static.tar.Z
+ DIRAX_TAR_ARGS=-xZf
+ XDS=x
+ PLATFORM="Linux x86 (32 bit)"
+fi
+
+if [ "$SYS" == "Darwin x86_64" ]; then
+ MOSFLM=mosflm-linux-64-noX11
+ DIRAX=dirax1.16-Darwin-x86_64.tar.gz
+ DIRAX_TAR_ARGS=-xzf
+ XDS=XDS-OSX_64.tar.gz
+ PLATFORM="MacOS x86_64"
+fi
+
+if [ "$SYS" == "Darwin arm64" ]; then
+ MOSFLM=x
+ DIRAX=x
+ XDS=XDS-Apple_M1.tar.gz
+ PLATFORM="MacOS ARM (Apple silicon)"
+fi
+
+if [ "x$PLATFORM" == x ]; then
+ echo Could not identify your system: $SYS
+ uname -a
+ exit 1
+fi
if [ x$1 == x--help ]; then
echo 'This script downloads and installs Mosflm, DirAx and XDS'
@@ -14,7 +52,8 @@ if [ x$1 == x--help ]; then
echo Step 2: $0 'install ' \# perhaps with sudo
echo
echo ' Installation location:' $CFPREFIX
- echo 'CCP4 syminfo.lib location:' $SYMINFO
+ echo 'CCP4 syminfo.lib location:' $SYMINFO '(only needed for Mosflm)'
+ echo ' Platform:' $PLATFORM
echo
echo 'Please note the license conditions for each program:'
echo ' DirAx: http://www.crystal.chem.uu.nl/distr/dirax/'
@@ -23,13 +62,6 @@ if [ x$1 == x--help ]; then
exit 0
fi
-if [ ! -f $SYMINFO ]; then
- echo Cannot find SYMINFO file at $SYMINFO
- echo -n You need to install libCCP4
- echo ' (separately, or as part of the CrystFEL installation process)'
- echo Or, edit the script to set the correct location
- exit 1
-fi
# Exit immediately if something doesn't work
set -e
@@ -41,53 +73,94 @@ if [ x$1 != xinstall ]; then
exit 1
fi
+ if [ -d mosflm-tempdir -o -d xds-tempdir -o -d dirax-tempdir ]; then
+ echo Delete the following directories before trying again:
+ echo mosflm-tempdir xds-tempdir dirax-tempdir
+ exit 1
+ fi
+
echo ' Installation location:' $CFPREFIX
- echo 'CCP4 syminfo.lib location:' $SYMINFO
+ echo 'CCP4 syminfo.lib location:' $SYMINFO '(only needed for Mosflm)'
+ echo ' Platform:' $PLATFORM
echo
- mkdir mosflm-tempdir
- pushd mosflm-tempdir
- wget -nv https://www.mrc-lmb.cam.ac.uk/mosflm/mosflm/ver740/pre-built/mosflm-linux-64-noX11.zip
- unzip mosflm-linux-64-noX11.zip
- echo '#!/bin/sh' > mosflm
- echo "export SYMINFO=$SYMINFO" >> mosflm
- echo "$CFPREFIX/bin/mosflm.real -n \$@" >> mosflm
- chmod +x mosflm
- popd
+ if [ x$MOSFLM != xx ]; then
+
+ if [ ! -f $SYMINFO ]; then
+ echo Cannot find SYMINFO file at $SYMINFO
+ echo -n You need to install libCCP4
+ echo ' (separately, or as part of the CrystFEL installation process)'
+ echo Or, edit the script to set the correct location
+ exit 1
+ fi
+
+ mkdir mosflm-tempdir
+ pushd mosflm-tempdir
+ wget -nv https://www.mrc-lmb.cam.ac.uk/mosflm/mosflm/ver740/pre-built/$MOSFLM.zip
+ unzip $MOSFLM.zip
+ mv $MOSFLM mosflm.real
+ echo '#!/bin/sh' > mosflm
+ echo "export SYMINFO=$SYMINFO" >> mosflm
+ echo "$CFPREFIX/bin/mosflm.real -n \$@" >> mosflm
+ chmod +x mosflm
+ popd
+ else
+ echo "Mosflm is not available for your system."
+ fi
- mkdir dirax-tempdir
- pushd dirax-tempdir
- wget -nv http://www.crystal.chem.uu.nl/distr/dirax/download/dirax1.17-Linux-x86_64-static.tar.Z
- set +e
- tar -xZf dirax1.17-Linux-x86_64-static.tar.Z
- if [ $? != 0 ]; then
- echo You might need to install package \'ncompress\'
- exit 1
+ if [ x$DIRAX != xx ]; then
+ mkdir dirax-tempdir
+ pushd dirax-tempdir
+ wget -nv http://www.crystal.chem.uu.nl/distr/dirax/download/$DIRAX
+ set +e
+ tar $DIRAX_TAR_ARGS $DIRAX
+ if [ $? != 0 ]; then
+ echo You might need to install package \'ncompress\'
+ exit 1
+ fi
+ set -e
+ mv dirax dirax.real
+ echo "#!/bin/sh" > dirax
+ echo "exec $CFPREFIX/bin/dirax.real \"\$@\"" >> dirax
+ chmod +x dirax
+ popd
+ else
+ echo Dirax is not available for your system.
fi
- set -e
- mv dirax dirax.real
- echo "#!/bin/sh" > dirax
- echo "exec $CFPREFIX/bin/dirax.real \"\$@\"" >> dirax
- chmod +x dirax
- popd
- mkdir xds-tempdir
- pushd xds-tempdir
- wget -nv https://xds.mr.mpg.de/XDS-INTEL64_Linux_x86_64.tar.gz
- tar -xzf XDS-INTEL64_Linux_x86_64.tar.gz
- popd
+ if [ x$XDS != xx ]; then
+ mkdir xds-tempdir
+ pushd xds-tempdir
+ wget -nv https://xds.mr.mpg.de/$XDS.tar.gz
+ tar -xzf $XDS.tar.gz
+ mv $XDS/xds xds
+ popd
+ else
+ echo XDS is not available for your system.
+ fi
else
- if [ ! -f mosflm-tempdir/mosflm-linux-64-noX11 ]; then
- echo Run this script without \'install\' first
- exit 1
+ if [ ! -f mosflm-tempdir/mosflm.real ]; then
+ if [ ! -f xds-tempdir/xds ]; then
+ echo Run this script without \'install\' first
+ exit 1
+ fi
fi
set -x
- install -D mosflm-tempdir/mosflm-linux-64-noX11 $CFPREFIX/bin/mosflm.real
- install mosflm-tempdir/mosflm $CFPREFIX/bin/mosflm
- install dirax-tempdir/dirax dirax-tempdir/dirax.real $CFPREFIX/bin
- install --mode=644 dirax-tempdir/dirax.commands $CFPREFIX/bin
- install xds-tempdir/XDS-INTEL64_Linux_x86_64/xds $CFPREFIX/bin/xds
+
+ if [ -f mosflm-tempdir/mosflm ]; then
+ install -D mosflm-tempdir/mosflm.real $CFPREFIX/bin/mosflm.real
+ install mosflm-tempdir/mosflm $CFPREFIX/bin/mosflm
+ fi
+
+ if [ -f dirax-tempdir/dirax ]; then
+ install dirax-tempdir/dirax dirax-tempdir/dirax.real $CFPREFIX/bin
+ install --mode=644 dirax-tempdir/dirax.commands $CFPREFIX/bin
+ fi
+
+ if [ -f xds-tempdir/xds ]; then
+ install xds-tempdir/xds $CFPREFIX/bin/xds
+ fi
fi