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2021-03-11PinkIndexer: Remove wide bandwidth stuffThomas White
This will return later in a more centralised form, if we decide to work further on wide bandwidth.
2021-03-11PinkIndexer: Remove custom indexing checksThomas White
These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it.
2021-03-11indexamajig: Add --wavelength-estimateThomas White
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy
2021-03-09Add the ability to use multiple bad pixel masks at onceThomas White
2021-01-22compare_hkl: Remove --intensity-shellsThomas White
No-one uses it, it doubles the complexity of the code, and the manual even warns not to use it.
2021-01-22Remove doc/stream-format.txtThomas White
The tiny amount of information in that file isn't relevant (or even correct..) any more.
2021-01-08Update documentation about max_adu, and add a warningThomas White
2020-12-18Improve documentation about file-based peak listsThomas White
2020-12-18Add peak_list_type in geometry fileThomas White
2020-12-16Add flag_{lessthan,morethan,equal} in geometry fileThomas White
This makes handling Pilatus/Eiger files, as well as many others, much easier.
2020-10-23partialator(1): Add missing partiality modelsThomas White
2020-07-29Add detector_shift_{x,y} to geometry fileThomas White
2020-07-29Rearrange geometry manual pageThomas White
2020-07-29Add wavelength and electron_voltage, plus units, to geometry fileThomas White
2020-07-29Remove hdfsee manual pageThomas White
2020-03-04fix documentation for pinkIndexerYaroslav Gevorkov
2020-03-04add option -pinkIndexer-max-refinement-disbalanceYaroslav Gevorkov
2020-02-13Update crystfel(7) manual pageThomas White
2020-02-08pinIndexer documentation tuningYaroslav Gevorkov
2020-02-07refine documentation for --pinkIndexer-override-bandwidthYaroslav Gevorkov
2020-02-07fix pinkIndexer documentationYaroslav Gevorkov
2020-02-05Manual page updatesThomas White
2020-02-05Fix manual typoThomas White
2020-01-10Mass update of copyright datesThomas White
2019-11-18Fix documentationThomas White
2019-11-18PinkIndexer documentationYaroslav Gevorkov
2019-10-24get_hkl: Clean up resolution cutoffs and add --lowresThomas White
2019-09-23Get rid of "rescut" integration flagThomas White
Its behaviour is 100% covered by the push-res parameter, which can be set to infinity for no cutoff.
2019-09-12indexamajig: Get rid of --fix-bandwidth / use bandwidth from geometry fileThomas White
2019-09-12Add pinkIndexer interfaceYaroslav Gevorkov
2019-09-05Allow the polarsation correction to be completely disabledThomas White
2019-09-02indexamajig(1): Fix capitalisationThomas White
2019-09-02process_hkl,partialator: Allow arbitrary direction and degree of polarisationThomas White
2019-08-29indexamajig: Remove --no-cell-combinationsThomas White
Also remove all the related API stuff. We now have a much better way of checking indexing results.
2019-08-27cell_tool: Clarify interpretation of tolerancesThomas White
2019-07-22ambigator: Use three pre-defined resolution bins if no resolution limits are ↵Thomas White
given
2019-07-17Merge branch 'tom/zmq'Thomas White
2019-07-16Add matrix notation docThomas White
2019-07-05geoptimiser: Use geometry from stream, if presentThomas White
Simply omit the -g option to use geometry from stream.
2019-06-25partial_sim: Add --template-streamThomas White
2019-06-21partialator: Add --force-lambdaThomas White
2019-05-08Add missing =nThomas White
2019-05-08Add new xgandalf optionsYaroslav Gevorkov
2019-05-07Remove old documentation stuffThomas White
2019-04-02Update crystfel_geometry(5)Thomas White
2019-03-15Add documentationThomas White
2019-03-11cell_tool: Add documentation for --transformThomas White
2019-03-11Consider fractional cell lengths during comparisonThomas White
This is WAY too slow. Need another algorithm.
2019-03-11Initial cell_tool (implementing find_ambi only)Thomas White
2019-03-06indexamajig: Rename --min-gradient to --min-squared-gradientThomas White
The eventual aim of this is to deprecate the "--min-gradient" option, resolving the long-standing confusion about whether this option is the gradient or the squared gradient.
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