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2018-06-29Merge branch 'tom/xgandalf'Thomas White
2018-06-28indexamajig: Delete the temporary folder afterwardsThomas White
... with extreme caution.
2018-06-28indexamajig: Tighten permissions on temporary folderThomas White
2018-06-26Embed diffraction.cl and hdfsee.ui into executablesThomas White
Having to install these causes problems, e.g. you can't run from build directory nor run tests without installing. For hdfsee.ui, the XML is now embedded in the code just as it is for cell_explorer. diffraction.cl is a bit too long and complicated for that. There are a number of nasty ways to embed such files. This one seems to be the overall least nasty, although it requires data/gen-resources to be run whenever diffraction.cl is changed.
2018-06-21Fix OpenCL tests and includesThomas White
2018-06-20Restore help about secondary Miller indicesThomas White
2018-06-20FormattingThomas White
2018-06-20Finish removing "selector"Thomas White
2018-06-18indexamajig: Tidy up --helpThomas White
2018-06-18Get rid of "selector"Thomas White
2018-06-18Remove tmp_enumThomas White
2018-06-18Add interface to XGANDALF indexerYaroslav Gevorkov
2018-06-12list_events: Abort creation if event list can't be made for any fileThomas White
Previously, it would exit if a file couldn't be opened, but not if its layout was wrong for the geometry file. Now, it always exits to allow the problem to be fixed.
2018-06-12hdfsee: Show image size at binning 1Thomas White
Used to be "raw image size", but that's meaningless since "de-slabbification". All the panels are stored separately. This commit also clarifies the meaning of "Smaller numbers".
2018-06-12Whitespace fussinessThomas White
2018-06-10hdfsee: Fix statusbar snprintf() nonsenseThomas White
2018-06-10indexamajig: Estimate resolution based on peaks onlyThomas White
2018-05-30Merge branch 'tom/peakfinder9'Thomas White
2018-05-30Whitespace fussinessThomas White
2018-05-30Use only one min-snr optionThomas White
2018-05-30Changed parameter window-radius -> local-bg-radiusYaroslav Gevorkov
2018-05-30Changed sig_fac to min_snrYaroslav Gevorkov
2018-05-30libcrystfel should link against GSL and pthreadsThomas White
Then programs using libcrystfel don't need -lgsl (unless they use it themselves, of course)
2018-05-25Delete obsolete include and variableYaroslav Gevorkov
2018-05-25Change getopt numbers to avoid overlap with charsYaroslav Gevorkov
2018-05-24Formatting in --helpThomas White
2018-05-24Fix typos in helpThomas White
2018-05-24Generalise peakfinder9 error messages, and fail if not compiled inThomas White
2018-05-24Update authorship and copyright datesThomas White
2018-05-24FormattingThomas White
2018-05-24Add "peakfinder9"Yaroslav Gevorkov
2018-05-24indexamajig: Warn if a frame takes more than 10 minutes to processThomas White
2018-05-24indexamajig: Show timeout in minutes not secondsThomas White
2018-05-17Merge branch 'tom/cmake'Thomas White
2018-05-11partialator: Don't refuse to start if pr-logs folder existsThomas White
It's a nice idea, but I'm not sure it helps.
2018-05-11Fix up scaling definitionsThomas White
2018-05-11Disable initial scaling if requestedThomas White
2018-05-11Fix memory leaksThomas White
2018-05-07Remove unnecessary scaling loopThomas White
2018-05-07Add more reflection checks before scalingThomas White
2018-05-07Add SCALE_VERBOSE_ERRORSThomas White
2018-05-07Implement scale_one_crystal(.., SCALE_NO_B)Thomas White
2018-05-07Pass scaling flags downThomas White
2018-05-07Simplify scalingThomas White
2018-05-07Move residual() and log_residual() to merge.cThomas White
2018-05-07Preparation for adjusting B factor during post-refinementThomas White
Add --no-Bscale option to partialator, and pass down as far as needed residual() no longer does scaling: call scale_one_crystal() first if necessary scale_one() replaces old linear_scale() function to scale a pair of RefLists (but so far does the same as the old function)
2018-05-07Remove unused parameterThomas White
2018-05-04Expand warning about --push-res without rescutThomas White
2018-05-04Put list of indexing methods into stream headerThomas White
Needed for when the methods are auto-determined.
2018-05-04geoptimiser: Add options for AGIPDOleksandr Yefanov
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